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Resource Profile: LabObservationMicrobiologyObservation - Mappings

Mappings for the LabObservationMicrobiologyObservation resource profile.

Mappings to Structures in this Implementation Guide

No Mappings Found

Mappings to other Structures

No Mappings Found

Other Mappings

Name	Workflow Pattern	SNOMED CT Concept Domain Binding	HL7 v2 Mapping	RIM Mapping	FiveWs Pattern Mapping	SNOMED CT Attribute Binding
Observation	Event	< 363787002 |Observable entity|	OBX	Observation[classCode=OBS moodCode=EVN]
id
meta
implicitRules
language
text				Act.text?
contained				N/A
extension				N/A
modifierExtension				N/A
identifier	Event.identifier		1) OBR-3 + OBX-3 + OBX-4 or 2) OBR-3 + OBR-4 + OBX-3 + OBX-4 or 2) some other way to uniquely ID the OBR/ORC + OBX-3 + OBX-4.	id	FiveWs.identifier
id				n/a
extension				n/a
use			N/A	Role.code or implied by context
type			CX.5	Role.code or implied by context
system			CX.4 / EI-2-4	II.root or Role.id.root
value			CX.1 / EI.1	II.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
period			CX.7 + CX.8	Role.effectiveTime or implied by context
assigner			CX.4 / (CX.4 CX.9 CX.10)	II.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
basedOn	Event.basedOn		ORC	.inboundRelationship[typeCode=COMP].source[moodCode=EVN]
partOf	Event.partOf		Varies by domain	.outboundRelationship[typeCode=FLFS].target
status	Event.status	< 445584004 |Report by finality status|	OBX-11	status Amended & Final are differentiated by whether it is the subject of a ControlAct event with a type of "revise"	FiveWs.status
Slices for category				.outboundRelationship[typeCode="COMP].target[classCode="LIST" moodCode="EVN"].code	FiveWs.class
category:Laboratory				.outboundRelationship[typeCode="COMP].target[classCode="LIST" moodCode="EVN"].code	FiveWs.class
code	Event.code	< 363787002 |Observable entity| OR < 386053000 |Evaluation procedure|	OBX-3	code	FiveWs.what[x]	116680003 |Is a|
id				n/a
extension				n/a
coding			C*E.1-8 C*E.10-22	union(. ./translation)
id				n/a
extension				n/a
system			C*E.3	./codeSystem
version			C*E.7	./codeSystemVersion
code			C*E.1	./code
display			C*E.2 - but note this is not well followed	CV.displayName
userSelected			Sometimes implied by being first	CD.codingRationale
text			C*E.9. But note many systems use C*E.2 for this	./originalText[mediaType/code="text/plain"]/data
subject	Event.subject		PID-3	participation[typeCode=RTGT]	FiveWs.subject
focus			OBX-3	participation[typeCode=SBJ]	FiveWs.subject
encounter	Event.context		PV1	inboundRelationship[typeCode=COMP].source[classCode=ENC moodCode=EVN]	FiveWs.context
Slices for effective[x]	Event.occurrence[x]		OBX-14 and/or OBX-19 after v2.4 (depends on who observation made)	effectiveTime	FiveWs.done[x]
effective[x]:effectiveDateTime	Event.occurrence[x]		OBX-14 and/or OBX-19 after v2.4 (depends on who observation made)	effectiveTime	FiveWs.done[x]
issued			OBR.22 (or MSH.7) or perhaps OBX-19 (depends on who observation made)	participation[typeCode=AUT].time	FiveWs.recorded
performer	Event.performer.actor		OBX.15 / (Practitioner) OBX-16 PRT-4='RO' / (Device) OBX-18 PRT-4='EQUIP' / (Organization) OBX-23 PRT-4='PO'	participation[typeCode=PRF]	FiveWs.actor
value[x]		< 441742003 |Evaluation finding|	OBX.2 OBX.5 OBX.6	value		363714003 |Interprets|
dataAbsentReason			N/A	value.nullFlavor
interpretation		< 260245000 |Findings values|	OBX-8	interpretationCode		363713009 |Has interpretation|
note			NTE.3 (partner NTE to OBX or sometimes another (child?) OBX)	subjectOf.observationEvent[code="annotation"].value
bodySite		< 123037004 |Body structure|	OBX-20	targetSiteCode		718497002 |Inherent location|
method			OBX-17	methodCode
specimen		< 123038009 |Specimen|	SPM segment	participation[typeCode=SPC].specimen		704319004 |Inherent in|
device		< 49062001 |Device|	OBX-17 / PRT -10	participation[typeCode=DEV]		424226004 |Using device|
referenceRange			OBX.7	outboundRelationship[typeCode=REFV]/target[classCode=OBS moodCode=EVN]
id				n/a
extension				n/a
modifierExtension				N/A
low			OBX-7	IVL_PQ.low
high			OBX-7	IVL_PQ.high
type		< 260245000 |Findings values| OR < 365860008 |General clinical state finding| OR < 250171008 |Clinical history or observation findings| OR < 415229000 |Racial group| OR < 365400002 |Finding of puberty stage| OR < 443938003 |Procedure carried out on subject|	OBX-10	interpretationCode
appliesTo		< 260245000 |Findings values| OR < 365860008 |General clinical state finding| OR < 250171008 |Clinical history or observation findings| OR < 415229000 |Racial group| OR < 365400002 |Finding of puberty stage| OR < 443938003 |Procedure carried out on subject|	OBX-10	interpretationCode
age				outboundRelationship[typeCode=PRCN].targetObservationCriterion[code="age"].value
text			OBX-7	ST
hasMember			Relationships established by OBX-4 usage	outBoundRelationship
derivedFrom			Relationships established by OBX-4 usage	.targetObservation
component			containment by OBX-4?	outBoundRelationship[typeCode=COMP]
id				n/a
extension				n/a
modifierExtension				N/A
code		< 363787002 |Observable entity| OR < 386053000 |Evaluation procedure|	OBX-3	code	FiveWs.what[x]
value[x]		363714003 |Interprets| < 441742003 |Evaluation finding|	OBX.2 OBX.5 OBX.6	value		363714003 |Interprets|
dataAbsentReason			N/A	value.nullFlavor
interpretation		< 260245000 |Findings values|	OBX-8	interpretationCode		363713009 |Has interpretation|
referenceRange			OBX.7	outboundRelationship[typeCode=REFV]/target[classCode=OBS moodCode=EVN]
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