US Veterans Health Administration FHIR Map Set Implementation Guide
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Resource Profile: LabObservationMicrobiologyParasitologySpecimen - Mappings

Active as of 2025-06-20

Mappings for the LabObservationMicrobiologyParasitologySpecimen resource profile.

Scroll down for the Raw FHIR, CDW & SDA mappings (if any).

Note that the CDW, SDA and VPR XML mappings are derived from a look-up based on the VistA source.

Mapping Sources

Use Case: Lab Observation: Microbiology Parasitology (Source)Use Case: Lab Observation: Microbiology Parasitology (Source)PATIENT (2)63LABORATORY REFERENCELABORATORY TEST (60)100SITE/SPECIMENCOLLECTION SAMPLE (62).01NAMELAB DATA (63).01LRDFNMICROBIOLOGY (63.05).001IEN.01DATE/TIME SPECIMEN TAKEN.03DATE REPORT COMPLETED.055COLLECTION SAMPLE.06MICROBIOLOGY ACCESSION.35ORDERED TEST.99COMMENT ON SPECIMEN15PARASITE RPT STATUSORDERED TEST (63.5)13LAB TEST ORDEREDSITE/SPECIMEN (60.01)95.3LOINC CODELAB LOINC (95.3).01CODE1COMPONENT[NULL][Not NULL][NULL][Not NULL][NULL][Not NULL][Not NULL]

Raw Mappings

key status direction source mapApproach mapCase FHIR Path subPath mapValue mapParameter mapComment FHIR URL | Ver
1469 for review V2F MICROBIOLOGY - MICROBIOLOGY ACCESSION (63.05-.06) source value Specimen.accessionIdentifier http://hl7.org/fhir/StructureDefinition/Specimen | 4.0.1
1470 for review V2F MICROBIOLOGY - COLLECTION SAMPLE > COLLECTION SAMPLE - NAME (63.05-.055 > 62-.01) source value Specimen.type.text http://hl7.org/fhir/StructureDefinition/Specimen | 4.0.1

Mappings to Structures in this Implementation Guide

No Mappings Found

Mappings to other Structures

No Mappings Found

Other Mappings

NameRIM MappingFiveWs Pattern MappingHL7 v2 Mappingdoco
.. Specimen
Role[classCode=SPEC]
... id
... meta
... implicitRules
... text
Act.text?
... contained
N/A
... extension
N/A
... modifierExtension
N/A
... identifier
.id
FiveWs.identifier
SPM-2
... accessionIdentifier
  • .participation[typeCode=SBJ].act[classCode=ACSN
  • moodCode=EVN].id
FiveWs.identifier
SPM-30 (v2.7+)
... status
status
FiveWs.status
SPM-20
... type
.code
FiveWs.what[x]
SPM-4 and possibly SPM-5
.... id
n/a
.... extension
n/a
.... coding
  • union(.
  • ./translation)
  • C*E.1-8
  • C*E.10-22
.... text
./originalText[mediaType/code="text/plain"]/data
C*E.9. But note many systems use C*E.2 for this
... subject
.scoper or .scoper.playsRole
FiveWs.subject
... receivedTime
  • .participation[typeCode=SBJ].act[code=SPCREC
  • moodCode=EVN].effectiveTime
FiveWs.done[x]
SPM-18
... parent
.scoper (if parent) .player.scopesRole[classCode=SPEC].player (if child)
... request
outboundRelationship[typeCode=FLFS].target
FiveWs.why[x]
ORC? OBR-2/3?
... collection
  • .participation[typeCode=SBJ].act[classCode=SPECCOLLECT
  • moodCode=EVN]
SPM-14
.... id
n/a
.... extension
n/a
.... modifierExtension
N/A
.... collector
.participation[typeCode=PFM].role
FiveWs.actor
PRT
.... collected[x]
.effectiveTime
FiveWs.init
SPM-17
.... duration
FiveWs.init
.... quantity
.participation[typeCode=SBJ].role[classCode=SPEC].player.quantity
SPM-12
.... method
.methodCode
SPM-7
.... bodySite
.targetSiteCode
SPM-8 and SPM-9
.... fastingStatus[x]
OBR-
... processing
  • .participation[typeCode=SBJ].act[code=SPCTRT
  • moodCode=EVN]
.... id
n/a
.... extension
n/a
.... modifierExtension
N/A
.... description
.text
.... procedure
.code
.... additive
.participation[typeCode=CSM].role[classCode=ADTV].code
SPM-6
.... time[x]
.effectiveTime
... container
.player.scopingRole[classCode=CONT].scoper
.... id
n/a
.... extension
n/a
.... modifierExtension
N/A
.... identifier
.id
SAC-3
.... description
.desc
.... type
.code
SPM-27
.... capacity
.quantity
  • SAC 16
  • SAC17 and SAC 20
  • or SAC 21 and SAC 20
.... specimenQuantity
.playedRole[classCode=CONT].quantity
SAC-23 (value) SAC-24 (units
.... additive[x]
.scopesRole[classCode=ADTV].player
SAC-27
... condition
SPM-24
... note
  • .inboundRelationship[typeCode=SUBJ].source[classCode=OBS
  • moodCode=EVN
  • code="annotation"].value
OBX

doco Documentation for this format