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Resource Profile: LabObservationMicrobiologySpecimen - Mappings

Active as of 2025-03-31

Mappings for the LabObservationMicrobiologySpecimen resource profile.

Mappings for Veterans Health Information Systems Technology and Architecture (VistA) ()

LabObservationMicrobiologySpecimen
Specimen
accessionIdentifier	1469: source value based on MICROBIOLOGY - MICROBIOLOGY ACCESSION (63.05-.06)
type
text	1470: source value based on MICROBIOLOGY - COLLECTION SAMPLE > COLLECTION SAMPLE - NAME (63.05-.055 > 62-.01)

Mappings for Clinical Data Warehouse (CDW) ()

LabObservationMicrobiologySpecimen
Specimen
accessionIdentifier	Micro.Microbiology.MicrobiologyAccession
type
text	Micro.Microbiology.CollectionSampleIEN Dim.CollectionSample.CollectionSample,Dim.Topography.CollectionSample

Mappings for Summary Document Architecure (SDA) ()

LabObservationMicrobiologySpecimen
Specimen
accessionIdentifier	LabOrder.Extension[ResultExtension].GroupName

Mappings for RIM Mapping (http://hl7.org/v3)

LabObservationMicrobiologySpecimen
Specimen	Entity. Role, or Act, Role[classCode=SPEC]
text	Act.text?
contained	N/A
extension	N/A
modifierExtension	N/A
identifier	.id
accessionIdentifier	.participation[typeCode=SBJ].act[classCode=ACSN, moodCode=EVN].id
status	status
type	.code
id	n/a
extension	n/a
coding	union(., ./translation)
text	./originalText[mediaType/code="text/plain"]/data
subject	.scoper or .scoper.playsRole
receivedTime	.participation[typeCode=SBJ].act[code=SPCREC, moodCode=EVN].effectiveTime
parent	.scoper (if parent) .player.scopesRole[classCode=SPEC].player (if child)
request	outboundRelationship[typeCode=FLFS].target
collection	.participation[typeCode=SBJ].act[classCode=SPECCOLLECT, moodCode=EVN]
id	n/a
extension	n/a
modifierExtension	N/A
collector	.participation[typeCode=PFM].role
collected[x]	.effectiveTime
quantity	.participation[typeCode=SBJ].role[classCode=SPEC].player.quantity
method	.methodCode
bodySite	.targetSiteCode
processing	.participation[typeCode=SBJ].act[code=SPCTRT, moodCode=EVN]
id	n/a
extension	n/a
modifierExtension	N/A
description	.text
procedure	.code
additive	.participation[typeCode=CSM].role[classCode=ADTV].code
time[x]	.effectiveTime
container	.player.scopingRole[classCode=CONT].scoper
id	n/a
extension	n/a
modifierExtension	N/A
identifier	.id
description	.desc
type	.code
capacity	.quantity
specimenQuantity	.playedRole[classCode=CONT].quantity
additive[x]	.scopesRole[classCode=ADTV].player
note	.inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code="annotation"].value

Mappings for FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

LabObservationMicrobiologySpecimen
Specimen
identifier	FiveWs.identifier
accessionIdentifier	FiveWs.identifier
status	FiveWs.status
type	FiveWs.what[x]
subject	FiveWs.subject[x], FiveWs.subject
receivedTime	FiveWs.done[x]
request	FiveWs.why[x]
collection
collector	FiveWs.actor
collected[x]	FiveWs.init
duration	FiveWs.init

Mappings for HL7 v2 Mapping (http://hl7.org/v2)

LabObservationMicrobiologySpecimen
Specimen
identifier	SPM-2
accessionIdentifier	SPM-30 (v2.7+)
status	SPM-20
type	SPM-4 and possibly SPM-5
coding	C*E.1-8, C*E.10-22
text	C*E.9. But note many systems use C*E.2 for this
receivedTime	SPM-18
request	ORC? OBR-2/3?
collection	SPM-14
collector	PRT
collected[x]	SPM-17
quantity	SPM-12
method	SPM-7
bodySite	SPM-8 and SPM-9
fastingStatus[x]	OBR-
processing
additive	SPM-6
container
identifier	SAC-3
type	SPM-27
capacity	one of: SAC 16, SAC17 and SAC 20, or SAC 21 and SAC 20
specimenQuantity	SAC-23 (value) SAC-24 (units
additive[x]	SAC-27
condition	SPM-24
note	OBX