US Veterans Health Administration FHIR Map Set Implementation Guide
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US Veterans Health Administration FHIR Map Set Implementation Guide - Downloaded Version 1.9.0 See the Directory of published versions

Resource Profile: MicrobiologyMycobacteriologyObservationmycobact - Mappings

Active as of 2025-09-30

Mappings for the MicrobiologyMycobacteriologyObservationmycobact resource profile.

Scroll down for the Raw FHIR, CDW & SDA mappings (if any).

Note that the CDW, SDA and VPR XML mappings are derived from a look-up based on the VistA source.

Mapping Sources

Use Case: Microbiology: Mycobacteriology (Source)Use Case: Microbiology: Mycobacteriology (Source)LABORATORY TEST (60)100SITE/SPECIMENCOLLECTION SAMPLE (62).01NAMEMICROBIOLOGY (63.05).001IEN.01DATE/TIME SPECIMEN TAKEN.055COLLECTION SAMPLE.06MICROBIOLOGY ACCESSION.35ORDERED TEST23TB RPT STATUSORDERED TEST (63.5)13LAB TEST ORDEREDSITE/SPECIMEN (60.01)95.3LOINC CODELAB LOINC (95.3)[NULL][NULL][NULL]

Raw Mappings

key status direction source mapApproach mapCase FHIR Path subPath mapValue mapParameter mapComment FHIR URL | Ver
1526 for review V2F MICROBIOLOGY - ORDERED TEST > ORDERED TEST - LAB TEST ORDERED > LABORATORY TEST - SITE/SPECIMEN > SITE/SPECIMEN - LOINC CODE > LAB LOINC (63.05-.35 > 63.5-13 > 60-100 > 60.01-95.3 > 95.3-) fixed value NULL Observation[mycobact].code http://loinc.org#9825-1 "Mycobacterium sp identified in Isolate" http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab | 5.0.1
1491 for review V2F MICROBIOLOGY - TB RPT STATUS (63.05-23) terminologyMaps Observation[mycobact].status VF_LabObservationStatus http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab | 5.0.1

Mappings to Structures in this Implementation Guide

No Mappings Found

Mappings to other Structures

No Mappings Found

Other Mappings

NameVeterans Health Information Systems Technology and Architecture (VistA)Clinical Data Warehouse (CDW)Summary Document Architecure (SDA)Workflow PatternSNOMED CT Concept Domain BindingSNOMED CT Attribute Bindingdoco
.. Observation
Event
< 363787002 |Observable entity|
... id
... meta
... implicitRules
... language
... text
... contained
... extension
... modifierExtension
... identifier
Event.identifier
... basedOn
Event.basedOn
... partOf
Event.partOf
... status
terminologyMaps using VF_LabObservationStatus on MICROBIOLOGY - TB RPT STATUS (63.05-23)
Micro.Microbiology.MycobacteriologyReportStatus
Documents.DocumentCompletionStatus LabOrder.Result.ResultStatus
Event.status
< 445584004 |Report by finality status|
... Slices for category
.... category:Laboratory
... code
fixed value = http://loinc.org#9825-1 "Mycobacterium sp identified in Isolate" when MICROBIOLOGY - ORDERED TEST > ORDERED TEST - LAB TEST ORDERED > LABORATORY TEST - SITE/SPECIMEN > SITE/SPECIMEN - LOINC CODE > LAB LOINC (63.05-.35 > 63.5-13 > 60-100 > 60.01-95.3 > 95.3-) if NULL
Event.code
< 363787002 |Observable entity| OR < 386053000 |Evaluation procedure|
116680003 |Is a|
... subject
Event.subject
... focus
... encounter
Event.context
... effective[x]
Event.occurrence[x]
... issued
... performer
Event.performer.actor
... value[x]
< 441742003 |Evaluation finding|
363714003 |Interprets|
... dataAbsentReason
... interpretation
< 260245000 |Findings values|
363713009 |Has interpretation|
... note
... bodySite
< 123037004 |Body structure|
718497002 |Inherent location|
... method
... specimen
< 123038009 |Specimen|
704319004 |Inherent in|
... device
< 49062001 |Device|
424226004 |Using device|
... referenceRange
.... id
.... extension
.... modifierExtension
.... low
.... high
.... type
< 260245000 |Findings values| OR < 365860008 |General clinical state finding| OR < 250171008 |Clinical history or observation findings| OR < 415229000 |Racial group| OR < 365400002 |Finding of puberty stage| OR < 443938003 |Procedure carried out on subject|
.... appliesTo
< 260245000 |Findings values| OR < 365860008 |General clinical state finding| OR < 250171008 |Clinical history or observation findings| OR < 415229000 |Racial group| OR < 365400002 |Finding of puberty stage| OR < 443938003 |Procedure carried out on subject|
.... age
.... text
... hasMember
... derivedFrom
... component
.... id
.... extension
.... modifierExtension
.... code
< 363787002 |Observable entity| OR < 386053000 |Evaluation procedure|
.... value[x]
363714003 |Interprets| < 441742003 |Evaluation finding|
363714003 |Interprets|
.... dataAbsentReason
.... interpretation
< 260245000 |Findings values|
363713009 |Has interpretation|
.... referenceRange

doco Documentation for this format