US Veterans Health Administration FHIR Map Set Implementation Guide
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US Veterans Health Administration FHIR Map Set Implementation Guide - Downloaded Version 1.9.0 See the Directory of published versions

Resource Profile: MicrobiologyVirologyObservation - Mappings

Active as of 2025-09-30

Mappings for the MicrobiologyVirologyObservation resource profile.

Scroll down for the Raw FHIR, CDW & SDA mappings (if any).

Note that the CDW, SDA and VPR XML mappings are derived from a look-up based on the VistA source.

Mapping Sources

Use Case: Microbiology: Virology (Source)Use Case: Microbiology: Virology (Source)LABORATORY TEST (60)100SITE/SPECIMENCOLLECTION SAMPLE (62).01NAMEMICROBIOLOGY (63.05).001IEN.01DATE/TIME SPECIMEN TAKEN.055COLLECTION SAMPLE.06MICROBIOLOGY ACCESSION.35ORDERED TEST34VIROLOGY REPORT STATUSORDERED TEST (63.5)13LAB TEST ORDEREDSITE/SPECIMEN (60.01)95.3LOINC CODELAB LOINC (95.3)[NULL][NULL][NULL]

Raw Mappings

key status direction source mapApproach mapCase FHIR Path subPath mapValue mapParameter mapComment FHIR URL | Ver
1450 for review V2F MICROBIOLOGY - DATE/TIME SPECIMEN TAKEN (63.05-.01) source value Observation.effectiveDateTime http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab | 5.0.1
1659 for review V2F MICROBIOLOGY - MICROBIOLOGY ACCESSION (63.05-.06) reference Observation.specimen Specimen http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab | 5.0.1
1476 for review V2F MICROBIOLOGY - IEN (63.05-.001) source value Observation.identifier .value .system = http://va.gov/identifiers/$Sta3n/63.05 http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab | 5.0.1
2067 for review V2F fixed value Observation.category[Laboratory] http://terminology.hl7.org/CodeSystem/observation-category#laboratory http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab

Mappings to Structures in this Implementation Guide

No Mappings Found

Mappings to other Structures

No Mappings Found

Other Mappings

NameVeterans Health Information Systems Technology and Architecture (VistA)Clinical Data Warehouse (CDW)Summary Document Architecure (SDA)Workflow PatternSNOMED CT Concept Domain BindingSNOMED CT Attribute Bindingdoco
.. Observation
Event
< 363787002 |Observable entity|
... id
... meta
... implicitRules
... language
... text
... contained
... extension
... modifierExtension
... identifier
Event.identifier
.... id
.... extension
.... use
.... type
.... system
fixed value = http://va.gov/identifiers/$Sta3n/63.05
mapParameter line 1
.... value
source value based on MICROBIOLOGY - IEN (63.05-.001)
.... period
.... assigner
... basedOn
Event.basedOn
... partOf
Event.partOf
... status
Event.status
< 445584004 |Report by finality status|
... Slices for category
.... category:Laboratory
fixed value = http://terminology.hl7.org/CodeSystem/observation-category#laboratory
... code
Event.code
< 363787002 |Observable entity| OR < 386053000 |Evaluation procedure|
116680003 |Is a|
... subject
Event.subject
... focus
... encounter
Event.context
... Slices for effective[x]
Event.occurrence[x]
.... effective[x]:effectiveDateTime
source value based on MICROBIOLOGY - DATE/TIME SPECIMEN TAKEN (63.05-.01)
Micro.AntibioticSensitivity.SpecimenTakenDateTime Micro.AntibioticSensitivityComment.SpecimenTakenDateTime Micro.BacteriologyReports.SpecimenTakenDateTime Micro.MicroAntibioticLevel.SpecimenTakenDateTime Micro.MicroAudit.SpecimenTakenDateTime Micro.Microbiology.SpecimenTakenDateTime Micro.MicroOrderedTest.SpecimenTakenDateTime Micro.MicroSterilityResults.SpecimenTakenDateTime Micro.MycobacteriologyReports.SpecimenTakenDateTime Micro.Mycology.SpecimenTakenDateTime Micro.MycologyReports.SpecimenTakenDateTime Micro.Parasitology.SpecimenTakenDateTime Micro.ParasitologyReports.SpecimenTakenDateTime Micro.ParasitologyStage.SpecimenTakenDateTime Micro.Virology.SpecimenTakenDateTime Micro.VirologyReports.SpecimenTakenDateTime SStaff.SMicroOrderedTest.SpecimenTakenDateTime
Event.occurrence[x]
... issued
... performer
Event.performer.actor
... value[x]
< 441742003 |Evaluation finding|
363714003 |Interprets|
... dataAbsentReason
... interpretation
< 260245000 |Findings values|
363713009 |Has interpretation|
... note
... bodySite
< 123037004 |Body structure|
718497002 |Inherent location|
... method
... specimen
reference based on MICROBIOLOGY - MICROBIOLOGY ACCESSION (63.05-.06)
Micro.Microbiology.MicrobiologyAccession
LabOrder.Extension[ResultExtension].GroupName
< 123038009 |Specimen|
704319004 |Inherent in|
... device
< 49062001 |Device|
424226004 |Using device|
... referenceRange
.... id
.... extension
.... modifierExtension
.... low
.... high
.... type
< 260245000 |Findings values| OR < 365860008 |General clinical state finding| OR < 250171008 |Clinical history or observation findings| OR < 415229000 |Racial group| OR < 365400002 |Finding of puberty stage| OR < 443938003 |Procedure carried out on subject|
.... appliesTo
< 260245000 |Findings values| OR < 365860008 |General clinical state finding| OR < 250171008 |Clinical history or observation findings| OR < 415229000 |Racial group| OR < 365400002 |Finding of puberty stage| OR < 443938003 |Procedure carried out on subject|
.... age
.... text
... hasMember
... derivedFrom
... component
.... id
.... extension
.... modifierExtension
.... code
< 363787002 |Observable entity| OR < 386053000 |Evaluation procedure|
.... value[x]
363714003 |Interprets| < 441742003 |Evaluation finding|
363714003 |Interprets|
.... dataAbsentReason
.... interpretation
< 260245000 |Findings values|
363713009 |Has interpretation|
.... referenceRange

doco Documentation for this format