US Veterans Health Administration FHIR Map Set Implementation Guide
1.6.0 - 250701
US Veterans Health Administration FHIR Map Set Implementation Guide
1.6.0 - 250701
Publication Build: This will be filled in by the publication tooling
| Official URL: http://va.gov/fhir/StructureDefinition/Microbiology6305 | Version: 1.6.0 | |||
| Active as of 2025-06-20 | Computable Name: Microbiology6305 | |||
This StructureDefinition contains the Logical Model for the mapped parts of the source MICROBIOLOGY (63.05)
Usages:
Description of Profiles, Differentials, Snapshots and how the different presentations work.
| Name | Flags | Card. | Type | Description & Constraints Filter:   |
|---|---|---|---|---|
  Microbiology6305 |
0..* | Base | MICROBIOLOGY (63.05) Instances of this logical model can be the target of a Reference | |
  datetimeSpecimenTaken |
0..1 | Element | DATE/TIME SPECIMEN TAKEN (-.01) | |
| commentOnSpecimen |
0..1 | Element | COMMENT ON SPECIMEN (-.99) | |
| microbiologyAccession |
0..1 | Element | MICROBIOLOGY ACCESSION (-.06) | |
| ien |
0..1 | Element | IEN (-.001) | |
 orderedTest |
0..1 | Reference(ORDERED TEST (63.5)) | ORDERED TEST (-.35) | |
| dateReportCompleted |
0..1 | Element | DATE REPORT COMPLETED (-.03) | |
| collectionSample |
0..1 | Reference(COLLECTION SAMPLE (62)) | COLLECTION SAMPLE (-.055) | |
| bactRptStatus |
0..1 | Coding | BACT RPT STATUS (-11.5) Binding: LabObservationStatus VistA (preferred) | |
| tbRptStatus |
0..1 | Coding | TB RPT STATUS (-23) Binding: LabObservationStatus VistA (preferred) | |
| mycologyRptStatus |
0..1 | Coding | MYCOLOGY RPT STATUS (-19) Binding: LabObservationStatus VistA (preferred) | |
| parasiteRptStatus |
0..1 | Coding | PARASITE RPT STATUS (-15) Binding: LabObservationStatus VistA (preferred) | |
 virologyReportStatus |
0..1 | Coding | VIROLOGY REPORT STATUS (-34) Binding: LabObservationStatus VistA (preferred) | |
| Documentation for this format | ||||
| Path | Conformance | ValueSet | URI |
| Microbiology6305.bactRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.tbRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.mycologyRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.parasiteRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.virologyReportStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG |
This structure is derived from Base
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Microbiology6305 |
0..* | Base | MICROBIOLOGY (63.05) Instances of this logical model can be the target of a Reference | |
| datetimeSpecimenTaken |
0..1 | Element | DATE/TIME SPECIMEN TAKEN (-.01) | |
| commentOnSpecimen |
0..1 | Element | COMMENT ON SPECIMEN (-.99) | |
| microbiologyAccession |
0..1 | Element | MICROBIOLOGY ACCESSION (-.06) | |
| ien |
0..1 | Element | IEN (-.001) | |
| orderedTest |
0..1 | Reference(ORDERED TEST (63.5)) | ORDERED TEST (-.35) | |
| dateReportCompleted |
0..1 | Element | DATE REPORT COMPLETED (-.03) | |
| collectionSample |
0..1 | Reference(COLLECTION SAMPLE (62)) | COLLECTION SAMPLE (-.055) | |
| bactRptStatus |
0..1 | Coding | BACT RPT STATUS (-11.5) Binding: LabObservationStatus VistA (preferred) | |
| tbRptStatus |
0..1 | Coding | TB RPT STATUS (-23) Binding: LabObservationStatus VistA (preferred) | |
| mycologyRptStatus |
0..1 | Coding | MYCOLOGY RPT STATUS (-19) Binding: LabObservationStatus VistA (preferred) | |
| parasiteRptStatus |
0..1 | Coding | PARASITE RPT STATUS (-15) Binding: LabObservationStatus VistA (preferred) | |
| virologyReportStatus |
0..1 | Coding | VIROLOGY REPORT STATUS (-34) Binding: LabObservationStatus VistA (preferred) | |
| Documentation for this format | ||||
| Path | Conformance | ValueSet | URI |
| Microbiology6305.bactRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.tbRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.mycologyRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.parasiteRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.virologyReportStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG |
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Microbiology6305 |
0..* | Base | MICROBIOLOGY (63.05) Instances of this logical model can be the target of a Reference | |
| datetimeSpecimenTaken |
0..1 | Element | DATE/TIME SPECIMEN TAKEN (-.01) | |
| commentOnSpecimen |
0..1 | Element | COMMENT ON SPECIMEN (-.99) | |
| microbiologyAccession |
0..1 | Element | MICROBIOLOGY ACCESSION (-.06) | |
| ien |
0..1 | Element | IEN (-.001) | |
| orderedTest |
0..1 | Reference(ORDERED TEST (63.5)) | ORDERED TEST (-.35) | |
| dateReportCompleted |
0..1 | Element | DATE REPORT COMPLETED (-.03) | |
| collectionSample |
0..1 | Reference(COLLECTION SAMPLE (62)) | COLLECTION SAMPLE (-.055) | |
| bactRptStatus |
0..1 | Coding | BACT RPT STATUS (-11.5) Binding: LabObservationStatus VistA (preferred) | |
| tbRptStatus |
0..1 | Coding | TB RPT STATUS (-23) Binding: LabObservationStatus VistA (preferred) | |
| mycologyRptStatus |
0..1 | Coding | MYCOLOGY RPT STATUS (-19) Binding: LabObservationStatus VistA (preferred) | |
| parasiteRptStatus |
0..1 | Coding | PARASITE RPT STATUS (-15) Binding: LabObservationStatus VistA (preferred) | |
| virologyReportStatus |
0..1 | Coding | VIROLOGY REPORT STATUS (-34) Binding: LabObservationStatus VistA (preferred) | |
| Documentation for this format | ||||
| Path | Conformance | ValueSet | URI |
| Microbiology6305.bactRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.tbRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.mycologyRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.parasiteRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.virologyReportStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG |
This structure is derived from Base
Key Elements View
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Microbiology6305 |
0..* | Base | MICROBIOLOGY (63.05) Instances of this logical model can be the target of a Reference | |
| datetimeSpecimenTaken |
0..1 | Element | DATE/TIME SPECIMEN TAKEN (-.01) | |
| commentOnSpecimen |
0..1 | Element | COMMENT ON SPECIMEN (-.99) | |
| microbiologyAccession |
0..1 | Element | MICROBIOLOGY ACCESSION (-.06) | |
| ien |
0..1 | Element | IEN (-.001) | |
| orderedTest |
0..1 | Reference(ORDERED TEST (63.5)) | ORDERED TEST (-.35) | |
| dateReportCompleted |
0..1 | Element | DATE REPORT COMPLETED (-.03) | |
| collectionSample |
0..1 | Reference(COLLECTION SAMPLE (62)) | COLLECTION SAMPLE (-.055) | |
| bactRptStatus |
0..1 | Coding | BACT RPT STATUS (-11.5) Binding: LabObservationStatus VistA (preferred) | |
| tbRptStatus |
0..1 | Coding | TB RPT STATUS (-23) Binding: LabObservationStatus VistA (preferred) | |
| mycologyRptStatus |
0..1 | Coding | MYCOLOGY RPT STATUS (-19) Binding: LabObservationStatus VistA (preferred) | |
| parasiteRptStatus |
0..1 | Coding | PARASITE RPT STATUS (-15) Binding: LabObservationStatus VistA (preferred) | |
| virologyReportStatus |
0..1 | Coding | VIROLOGY REPORT STATUS (-34) Binding: LabObservationStatus VistA (preferred) | |
| Documentation for this format | ||||
| Path | Conformance | ValueSet | URI |
| Microbiology6305.bactRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.tbRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.mycologyRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.parasiteRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.virologyReportStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG |
Differential View
This structure is derived from Base
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Microbiology6305 |
0..* | Base | MICROBIOLOGY (63.05) Instances of this logical model can be the target of a Reference | |
| datetimeSpecimenTaken |
0..1 | Element | DATE/TIME SPECIMEN TAKEN (-.01) | |
| commentOnSpecimen |
0..1 | Element | COMMENT ON SPECIMEN (-.99) | |
| microbiologyAccession |
0..1 | Element | MICROBIOLOGY ACCESSION (-.06) | |
| ien |
0..1 | Element | IEN (-.001) | |
| orderedTest |
0..1 | Reference(ORDERED TEST (63.5)) | ORDERED TEST (-.35) | |
| dateReportCompleted |
0..1 | Element | DATE REPORT COMPLETED (-.03) | |
| collectionSample |
0..1 | Reference(COLLECTION SAMPLE (62)) | COLLECTION SAMPLE (-.055) | |
| bactRptStatus |
0..1 | Coding | BACT RPT STATUS (-11.5) Binding: LabObservationStatus VistA (preferred) | |
| tbRptStatus |
0..1 | Coding | TB RPT STATUS (-23) Binding: LabObservationStatus VistA (preferred) | |
| mycologyRptStatus |
0..1 | Coding | MYCOLOGY RPT STATUS (-19) Binding: LabObservationStatus VistA (preferred) | |
| parasiteRptStatus |
0..1 | Coding | PARASITE RPT STATUS (-15) Binding: LabObservationStatus VistA (preferred) | |
| virologyReportStatus |
0..1 | Coding | VIROLOGY REPORT STATUS (-34) Binding: LabObservationStatus VistA (preferred) | |
| Documentation for this format | ||||
| Path | Conformance | ValueSet | URI |
| Microbiology6305.bactRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.tbRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.mycologyRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.parasiteRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.virologyReportStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG |
Snapshot View
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Microbiology6305 |
0..* | Base | MICROBIOLOGY (63.05) Instances of this logical model can be the target of a Reference | |
| datetimeSpecimenTaken |
0..1 | Element | DATE/TIME SPECIMEN TAKEN (-.01) | |
| commentOnSpecimen |
0..1 | Element | COMMENT ON SPECIMEN (-.99) | |
| microbiologyAccession |
0..1 | Element | MICROBIOLOGY ACCESSION (-.06) | |
| ien |
0..1 | Element | IEN (-.001) | |
| orderedTest |
0..1 | Reference(ORDERED TEST (63.5)) | ORDERED TEST (-.35) | |
| dateReportCompleted |
0..1 | Element | DATE REPORT COMPLETED (-.03) | |
| collectionSample |
0..1 | Reference(COLLECTION SAMPLE (62)) | COLLECTION SAMPLE (-.055) | |
| bactRptStatus |
0..1 | Coding | BACT RPT STATUS (-11.5) Binding: LabObservationStatus VistA (preferred) | |
| tbRptStatus |
0..1 | Coding | TB RPT STATUS (-23) Binding: LabObservationStatus VistA (preferred) | |
| mycologyRptStatus |
0..1 | Coding | MYCOLOGY RPT STATUS (-19) Binding: LabObservationStatus VistA (preferred) | |
| parasiteRptStatus |
0..1 | Coding | PARASITE RPT STATUS (-15) Binding: LabObservationStatus VistA (preferred) | |
| virologyReportStatus |
0..1 | Coding | VIROLOGY REPORT STATUS (-34) Binding: LabObservationStatus VistA (preferred) | |
| Documentation for this format | ||||
| Path | Conformance | ValueSet | URI |
| Microbiology6305.bactRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.tbRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.mycologyRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.parasiteRptStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG | |
| Microbiology6305.virologyReportStatus | preferred | LabObservationStatus_VistAhttp://va.gov/fhir/ValueSet/LabObservationStatus-vistaFrom this IG |
This structure is derived from Base